Developmental Biology


日本語

Kumano lab. Developmental Biology
  Asamushi Research Center for Marine Biology, Graduate School of Life Science, Tohoku University

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<Background>

Our laboratory has started in July, 2013 and is located in the Mutsu bay area in the north of Japan, which is known to have one of the richest varieties of marine life in the Tohoku area. Benefitting from such a location, we study a variety of local marine animals. We are interested in a broad range of topics in marine biodiversity, including molecular and cellular mechanisms and evolutionary aspects of early embryonic development. Our current research interest is in 1) Molecular and Cellular mechanisms of tail shaping during ascidian embryogenesis, 2) Molecular mechanisms of germline segregation in primitive chordate embryos, and 3) Branching morphogenesis of medusa tentacles in a jellyfish.

Marine invertebrates possess possibly thousands of phenomena and developmental mechanisms that are still unknown to us. Only you can reveal to the world these fascinating phenomena and mechanisms with your interests and ideas. Come enjoy the process of solving unknowns with us using the variety of research techniques available here.molecular biology and live imaging.


<Research projects>
Germline development
Cells in the germline are totipotent and immortal through generations, distinguishing their existence from other cell types, somatic cells, which are to die upon individual death. Interestingly, germline cells are known to be segregated from somatic cells during early embryogenesis in many animals. We are investigating mechanisms by which germline cells are segregated
from somatic cells during early embryogenesis using marine invertebrates. We are specifically focusing on localized maternal factors that are successively inherited by the germline cells in the cleaving embryo and studying their functions on germline development. So far we have found that one of such maternal factors PEM (see black arrowheads in Figure) in the embryo of the ascidian, Halocynthia roretzi, represses gene expression globally in the germline cells. The germline silencing is observed in many animals and is generally thought to be required for its segregation from somatic cells such that germline development is not compromised by somatic gene expression and inductive signals from the surrounding cells.

We have also found that PEM, like Drosophila Pgc and Caenorhabditis PIE-1, represses germline transcription by keeping RNAP II underphosphorylated through binding to the p-TEFb complex (see Figure). Interestingly, PEM is unique to ascidian species, and so are Pgc and PIE-1 to the Drosophila and Caenorhabditis species, respectively. Therefore, our study shows that three non-homologous proteins, PEM, Pgc, and PIE-1, may have been independently incorporated to play analogous roles through binding to p-TEFb. We believe that this is an interesting example of evolutionary constraint on how a mechanism of germline silencing can evolve in diverse animals and are trying to understand how it might have happened during evolution by also studying closely related species such as Ciona to Halocynthia. In addition, we continue to investigate to find out the functions of other localized maternal factors in Halocynthia germline cell development, especially focusing on those in transcriptional regulation.

Tail shaping
In the ascidian late neurula embryo, the boundary between the trunk and tail regions can be recognized morphologically for the first time in development as a bending of the epithelial layer, which we call “KUBIRE” (a Japanese word for Small waist, see red arrowheads in Figure). After the “KUBIRE” formation, the posterior tail region elongates significantly and reaches eventually four to five fold length of the trunk part. Although ascidians belong to the phylum Chordata as we human beings do, the way of making tail in ascidians as mentioned above is quite different from other chordates such as vertebrates and amphioxus in that they make a cell mass called the tailbud at the tip of the neurula embryo and allow it grow andextend posteriorly.
Therefore, we reasoned that we might be able to discover a new principle for tissue shaping involved in an unusual way of making tail such as that observed in the ascidian embryo. We are thus currently interested in elucidating how and under what molecular basis individual cells move at right times and right places during "KUBIRE" formation and how such cell movements contribute to the tissue shaping.

Branching morphogenesis
We are interested in branching morphogenesis of the medusa tentcles of the jellyfish, Cladonema pacificum. One of the synapomorphic characteristics in the family Cladonematidae is that the medusa tentacles are branched with branches having nematocyst knobs and those having adhesive organs for landing (see Figure). Therefore, firstly, comparative analyses of tentacle branching mechanisms of Cladonema pacificum and other jellyfish species could provide us a useful insight into the evolutionary process of the acquisitions of a novel morphological trait (in this case, branching). Secondary and more importantly, since jellyfishes are not well-studied organisms and have simpe cell constitutions, we expect that studying their branching morphogenesis might reveal a novel principle in tissue shaping mechanisms, which could not be discovered in other branching phenomena such as those in the fly trachea systems, the mammalian lungs and vertebrate angiogenesis.